<?xml version="1.0" encoding="UTF-8"?><rss version="2.0" xmlns:content="http://purl.org/rss/1.0/modules/content/">
  <channel>
    <title>Molecules &amp;mdash; Paul Sutton</title>
    <link>https://personaljournal.ca/paulsutton/tag:Molecules</link>
    <description>Personal Blog</description>
    <pubDate>Tue, 05 May 2026 12:52:46 +0000</pubDate>
    <item>
      <title>Organic Chemistry Modelling 6</title>
      <link>https://personaljournal.ca/paulsutton/organic-chemistry-modelling-6</link>
      <description>&lt;![CDATA[Organic Chemistry Modelling 6&#xA;&#xA;We are now going to build the 4th row of molecules in the infographic below.&#xA;&#xA;Functional groups&#xA;&#xA;I have built the models I can,  I only have Sulfur atoms with 2 and 4 holes, so building some of these requires six bonds.  I can therefore build and photograph them, but will leave the label in place. &#xA;&#xA;Sulfoxide&#xA;Sulfoxide&#xA;&#xA;Sulfone&#xA;Sulfone&#xA;&#xA;Sulfinic Acid&#xA;Sulfinic Acid&#xA;&#xA;Sulfonic Acid&#xA;Sulfonic Acid&#xA;&#xA;Sulfonate Ester&#xA;Sulfonate Ester&#xA;&#xA;Thiocyanate&#xA;Thiocyanate&#xA;&#xA;Isothiocyanate&#xA;Isothiocyanate&#xA;&#xA;Thial&#xA;Thial&#xA;&#xA;Thioketone&#xA;Thioketone&#xA;&#xA;Phosphine&#xA;Phosphine&#xA;&#xA;Tags&#xA;&#xA;#Chemistry,#Organic,#Molecules,#MolyMod,#FunctionalGroups&#xA;&#xA;hr&#xD;&#xA;&#xD;&#xA;table&#xD;&#xA;thead&#xD;&#xA;trtda rel=&#34;me&#34; href=&#34;https://qoto.org/@zleap&#34;Mastodon/a/td&#xD;&#xA;tda href=&#34;https://wiki.ircnow.org/?n=Shelllabs.Intro&#34;ShellLabs/td&#xD;&#xA;tda href=&#34;https://joinmastodon.org/&#34;Join Mastodon/a/td/tr/thead/table&#xD;&#xA;center&#xD;&#xA;AI statement : b Consent is NOT granted to use the content of this blog for the purposes of AI training or similar activity.  Consent CANNOT be assumed, it has to be granted. /b&#xD;&#xA;/center&#xD;&#xA;&#xD;&#xA;a href=&#34;https://liberapay.com/PaulSutton/donate&#34;img alt=&#34;Donate using Liberapay&#34; src=&#34;https://liberapay.com/assets/widgets/donate.svg&#34;/a&#xD;&#xA;]]&gt;</description>
      <content:encoded><![CDATA[<p>Organic Chemistry Modelling 6</p>

<p>We are now going to build the 4th row of molecules in the infographic below.</p>

<p><img src="https://i0.wp.com/www.compoundchem.com/wp-content/uploads/2020/02/Organic-Functional-Groups-%E2%80%93-Expanded-v2.png?resize=1536%2C1086&ssl=1" alt="Functional groups"></p>

<p>I have built the models I can,  I only have Sulfur atoms with 2 and 4 holes, so building some of these requires six bonds.  I can therefore build and photograph them, but will leave the label in place.</p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/sulfoxide.JPG" alt="Sulfoxide">
<strong>Sulfoxide</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/sulfone.JPG" alt="Sulfone">
<strong>Sulfone</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/sulfinicacid.JPG" alt="Sulfinic Acid">
<strong>Sulfinic Acid</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/sulfonicacid.JPG" alt="Sulfonic Acid">
<strong>Sulfonic Acid</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/sulfonateester.JPG" alt="Sulfonate Ester">
<strong>Sulfonate Ester</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/thiocyanate.JPG" alt="Thiocyanate">
<strong>Thiocyanate</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/isothiocyanate.JPG" alt="Isothiocyanate">
<strong>Isothiocyanate</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/thial.JPG" alt="Thial">
<strong>Thial</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/thioketone.JPG" alt="Thioketone">
<strong>Thioketone</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/phosphine.JPG" alt="Phosphine">
<strong>Phosphine</strong></p>

<p><strong>Tags</strong></p>

<p><a href="/paulsutton/tag:Chemistry" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Chemistry</span></a>,<a href="/paulsutton/tag:Organic" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Organic</span></a>,<a href="/paulsutton/tag:Molecules" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Molecules</span></a>,<a href="/paulsutton/tag:MolyMod" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">MolyMod</span></a>,<a href="/paulsutton/tag:FunctionalGroups" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">FunctionalGroups</span></a></p>

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]]></content:encoded>
      <guid>https://personaljournal.ca/paulsutton/organic-chemistry-modelling-6</guid>
      <pubDate>Thu, 27 Jul 2023 13:25:04 +0000</pubDate>
    </item>
    <item>
      <title>Organic Chemistry Modelling 5</title>
      <link>https://personaljournal.ca/paulsutton/organic-chemistry-modelling-5</link>
      <description>&lt;![CDATA[Organic Chemistry Modelling 5&#xA;&#xA;We are now going to build the 3rd row of molecules in the infographic below.&#xA;&#xA;Functional groups&#xA;&#xA;Nitroso&#xA;Nitroso&#xA;&#xA;Imine&#xA;Imine&#xA;&#xA;Imide&#xA;Imide&#xA;&#xA;Azide&#xA;azide&#xA;&#xA;---&#xA;&#xA;Cyanate&#xA;Cyanate&#xA;&#xA;Iso-Cynate&#xA;Iso cyanate&#xA;&#xA;Azo Compound&#xA;Azocompound&#xA;&#xA;Thiol&#xA;Thiol&#xA;&#xA;Sulfide&#xA;Sulfide&#xA;&#xA;Disulfide&#xA;DiSulfide&#xA;&#xA;Tags&#xA;&#xA;#Chemistry,#Organic,#Molecules,#MolyMod,#FunctionalGroups&#xA;&#xA;hr&#xD;&#xA;&#xD;&#xA;table&#xD;&#xA;thead&#xD;&#xA;trtda rel=&#34;me&#34; href=&#34;https://qoto.org/@zleap&#34;Mastodon/a/td&#xD;&#xA;tda href=&#34;https://wiki.ircnow.org/?n=Shelllabs.Intro&#34;ShellLabs/td&#xD;&#xA;tda href=&#34;https://joinmastodon.org/&#34;Join Mastodon/a/td/tr/thead/table&#xD;&#xA;center&#xD;&#xA;AI statement : b Consent is NOT granted to use the content of this blog for the purposes of AI training or similar activity.  Consent CANNOT be assumed, it has to be granted. /b&#xD;&#xA;/center&#xD;&#xA;&#xD;&#xA;a href=&#34;https://liberapay.com/PaulSutton/donate&#34;img alt=&#34;Donate using Liberapay&#34; src=&#34;https://liberapay.com/assets/widgets/donate.svg&#34;/a&#xD;&#xA;]]&gt;</description>
      <content:encoded><![CDATA[<p>Organic Chemistry Modelling 5</p>

<p>We are now going to build the 3rd row of molecules in the infographic below.</p>

<p><img src="https://i0.wp.com/www.compoundchem.com/wp-content/uploads/2020/02/Organic-Functional-Groups-%E2%80%93-Expanded-v2.png?resize=1536%2C1086&ssl=1" alt="Functional groups"></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/nitroso.JPG" alt="Nitroso">
<strong>Nitroso</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/imine.JPG" alt="Imine">
<strong>Imine</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/imide.JPG" alt="Imide">
<strong>Imide</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/azide.JPG" alt="Azide">
<strong>azide</strong></p>

<hr>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/cyanate.JPG" alt="Cyanate">
<strong>Cyanate</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/isocyanate.JPG" alt="Iso-Cynate">
<strong>Iso cyanate</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/azocompound.JPG" alt="Azo Compound">
<strong>Azocompound</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/thiol.JPG" alt="Thiol">
<strong>Thiol</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/sulfide.JPG" alt="Sulfide">
<strong>Sulfide</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/disulfide.JPG" alt="Disulfide">
<strong>DiSulfide</strong></p>

<p><strong>Tags</strong></p>

<p><a href="/paulsutton/tag:Chemistry" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Chemistry</span></a>,<a href="/paulsutton/tag:Organic" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Organic</span></a>,<a href="/paulsutton/tag:Molecules" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Molecules</span></a>,<a href="/paulsutton/tag:MolyMod" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">MolyMod</span></a>,<a href="/paulsutton/tag:FunctionalGroups" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">FunctionalGroups</span></a></p>

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      <guid>https://personaljournal.ca/paulsutton/organic-chemistry-modelling-5</guid>
      <pubDate>Wed, 26 Jul 2023 06:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Organic Chemistry Modelling 4</title>
      <link>https://personaljournal.ca/paulsutton/organic-chemistry-modelling-4</link>
      <description>&lt;![CDATA[Organic Chemistry Modelling 4&#xA;&#xA;We are now going to build the 2nd row of molecules in the infographic below.&#xA;&#xA;Functional groups&#xA;&#xA;Acyl Halide&#xA;Acyl Halide&#xA;&#xA;Ester&#xA;Ester&#xA;&#xA;Ether&#xA;Ether&#xA;&#xA;Epoxide&#xA;Epoxide&#xA;&#xA;Amine&#xA;Amine&#xA;&#xA;Amide&#xA;Amide&#xA;&#xA;Nitrate&#xA;Nitrate&#xA;&#xA;Nitrite&#xA;Nitrite&#xA;&#xA;Nitrile&#xA;Nitrile&#xA;&#xA;Nitro&#xA;Nitro&#xA;&#xA;Tags&#xA;&#xA;#Chemistry,#Organic,#Molecules,#MolyMod,#FunctionalGroups&#xA;&#xA;hr&#xD;&#xA;&#xD;&#xA;table&#xD;&#xA;thead&#xD;&#xA;trtda rel=&#34;me&#34; href=&#34;https://qoto.org/@zleap&#34;Mastodon/a/td&#xD;&#xA;tda href=&#34;https://wiki.ircnow.org/?n=Shelllabs.Intro&#34;ShellLabs/td&#xD;&#xA;tda href=&#34;https://joinmastodon.org/&#34;Join Mastodon/a/td/tr/thead/table&#xD;&#xA;center&#xD;&#xA;AI statement : b Consent is NOT granted to use the content of this blog for the purposes of AI training or similar activity.  Consent CANNOT be assumed, it has to be granted. /b&#xD;&#xA;/center&#xD;&#xA;&#xD;&#xA;a href=&#34;https://liberapay.com/PaulSutton/donate&#34;img alt=&#34;Donate using Liberapay&#34; src=&#34;https://liberapay.com/assets/widgets/donate.svg&#34;/a&#xD;&#xA;]]&gt;</description>
      <content:encoded><![CDATA[<p>Organic Chemistry Modelling 4</p>

<p>We are now going to build the 2nd row of molecules in the infographic below.</p>

<p><img src="https://i0.wp.com/www.compoundchem.com/wp-content/uploads/2020/02/Organic-Functional-Groups-%E2%80%93-Expanded-v2.png?resize=1536%2C1086&ssl=1" alt="Functional groups"></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/acrl-halide.JPG" alt="Acyl Halide">
<strong>Acyl Halide</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/ester.JPG" alt="Ester">
<strong>Ester</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/ether.JPG" alt="Ether">
<strong>Ether</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/epoxide.JPG" alt="Epoxide">
<strong>Epoxide</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/amine.JPG" alt="Amine">
<strong>Amine</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/amide.JPG" alt="Amide">
<strong>Amide</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/nitrate.JPG" alt="Nitrate">
<strong>Nitrate</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/nitrite.JPG" alt="Nitrite">
<strong>Nitrite</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/nitrile.JPG" alt="Nitrile">
<strong>Nitrile</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/nitro.JPG" alt="Nitro">
<strong>Nitro</strong></p>

<p><strong>Tags</strong></p>

<p><a href="/paulsutton/tag:Chemistry" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Chemistry</span></a>,<a href="/paulsutton/tag:Organic" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Organic</span></a>,<a href="/paulsutton/tag:Molecules" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Molecules</span></a>,<a href="/paulsutton/tag:MolyMod" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">MolyMod</span></a>,<a href="/paulsutton/tag:FunctionalGroups" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">FunctionalGroups</span></a></p>

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      <guid>https://personaljournal.ca/paulsutton/organic-chemistry-modelling-4</guid>
      <pubDate>Tue, 25 Jul 2023 06:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Organic Chemistry Modelling 3</title>
      <link>https://personaljournal.ca/paulsutton/organic-chemistry-modelling-3</link>
      <description>&lt;![CDATA[Organic Chemistry Modelling 3&#xA;&#xA;So on to building models of the functional groups in the infographic on Compound Chemistry.&#xA;&#xA;Ethane&#xA;Alkanes&#xA;&#xA;Ethane&#xA;Alkene&#xA;&#xA;Ethane&#xA;Alkyne&#xA;&#xA;Ethane&#xA;Arene&#xA;&#xA;Alcohol&#xA;Haloalkane&#xA;&#xA;Alcohol&#xA;Alcohol&#xA;&#xA;Ethane&#xA;Alderhyde&#xA;&#xA;Ethane&#xA;Ketone&#xA;&#xA;Ethane&#xA;Carboxylic Acid&#xA;&#xA;Ethane&#xA;Acid Anhydride&#xA;&#xA;Tags&#xA;&#xA;#Chemistry,#Organic,#Molecules,#MolyMod,#FunctionalGroups&#xA;&#xA;hr&#xD;&#xA;&#xD;&#xA;table&#xD;&#xA;thead&#xD;&#xA;trtda rel=&#34;me&#34; href=&#34;https://qoto.org/@zleap&#34;Mastodon/a/td&#xD;&#xA;tda href=&#34;https://wiki.ircnow.org/?n=Shelllabs.Intro&#34;ShellLabs/td&#xD;&#xA;tda href=&#34;https://joinmastodon.org/&#34;Join Mastodon/a/td/tr/thead/table&#xD;&#xA;center&#xD;&#xA;AI statement : b Consent is NOT granted to use the content of this blog for the purposes of AI training or similar activity.  Consent CANNOT be assumed, it has to be granted. /b&#xD;&#xA;/center&#xD;&#xA;&#xD;&#xA;a href=&#34;https://liberapay.com/PaulSutton/donate&#34;img alt=&#34;Donate using Liberapay&#34; src=&#34;https://liberapay.com/assets/widgets/donate.svg&#34;/a&#xD;&#xA;]]&gt;</description>
      <content:encoded><![CDATA[<p>Organic Chemistry Modelling 3</p>

<p>So on to building models of the functional groups in the infographic on <a href="https://www.compoundchem.com/infographics/" rel="nofollow">Compound Chemistry</a>.</p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/ethane.JPG" alt="Ethane">
<strong>Alkanes</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/ethene.JPG" alt="Ethane">
<strong>Alkene</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/alkyne.jpg" alt="Ethane">
<strong>Alkyne</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/phenol.JPG" alt="Ethane">
<strong>Arene</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/haloalkane.JPG" alt="Alcohol">
<strong>Haloalkane</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/methanol-vertical.JPG" alt="Alcohol">
<strong>Alcohol</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/alderhyde.JPG" alt="Ethane">
<strong>Alderhyde</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/keytone.JPG" alt="Ethane">
<strong>Ketone</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/carboxylic-acid.JPG" alt="Ethane">
<strong>Carboxylic Acid</strong></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/acid-anhydride.JPG" alt="Ethane">
<strong>Acid Anhydride</strong></p>

<p><strong>Tags</strong></p>

<p><a href="/paulsutton/tag:Chemistry" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Chemistry</span></a>,<a href="/paulsutton/tag:Organic" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Organic</span></a>,<a href="/paulsutton/tag:Molecules" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Molecules</span></a>,<a href="/paulsutton/tag:MolyMod" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">MolyMod</span></a>,<a href="/paulsutton/tag:FunctionalGroups" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">FunctionalGroups</span></a></p>

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      <guid>https://personaljournal.ca/paulsutton/organic-chemistry-modelling-3</guid>
      <pubDate>Sun, 23 Jul 2023 06:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Organic Chemistry Modelling 2</title>
      <link>https://personaljournal.ca/paulsutton/organic-chemistry-modelling-2</link>
      <description>&lt;![CDATA[Organic Chemistry Modelling 2&#xA;&#xA;I have started to build some common functional groups and related molecules.  Here we have the Basic HydroCarbon Benzine ( C6 H6, by adding the OH (Alcohol) functional group we get Phenol (2nd picture). ( C6 H5 OH ).&#xA;&#xA;Benzine&#xA;&#xA;Phenol&#xA;&#xA;We looked at basic Alkanes yesterday,  if we take,for example Methane ( CH4 ) we can replace a Hydrogen with a OH group (Oxygen + Hydrogen) to make methanol. ( CH3 OH)&#xA;&#xA;Methanol&#xA;&#xA;Functional groups&#xA;&#xA;Tags&#xA;&#xA;#Chemistry,#Organic,#Molecules,#MolyMod,#Alkanes&#xA;&#xA;hr&#xD;&#xA;&#xD;&#xA;table&#xD;&#xA;thead&#xD;&#xA;trtda rel=&#34;me&#34; href=&#34;https://qoto.org/@zleap&#34;Mastodon/a/td&#xD;&#xA;tda href=&#34;https://wiki.ircnow.org/?n=Shelllabs.Intro&#34;ShellLabs/td&#xD;&#xA;tda href=&#34;https://joinmastodon.org/&#34;Join Mastodon/a/td/tr/thead/table&#xD;&#xA;center&#xD;&#xA;AI statement : b Consent is NOT granted to use the content of this blog for the purposes of AI training or similar activity.  Consent CANNOT be assumed, it has to be granted. /b&#xD;&#xA;/center&#xD;&#xA;&#xD;&#xA;a href=&#34;https://liberapay.com/PaulSutton/donate&#34;img alt=&#34;Donate using Liberapay&#34; src=&#34;https://liberapay.com/assets/widgets/donate.svg&#34;/a&#xD;&#xA;]]&gt;</description>
      <content:encoded><![CDATA[<p>Organic Chemistry Modelling 2</p>

<p>I have started to build some common functional groups and related molecules.  Here we have the Basic HydroCarbon Benzine ( C<em>6 H</em>6, by adding the OH (Alcohol) functional group we get Phenol (2nd picture). ( C<em>6 H</em>5 OH ).</p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/benzene.JPG" alt="Benzine"></p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/phenol.JPG" alt="Phenol"></p>

<p>We looked at basic Alkanes yesterday,  if we take,for example Methane ( CH<em>4 ) we can replace a Hydrogen with a OH group (Oxygen + Hydrogen) to make methanol. ( CH</em>3 OH)</p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/methanol-vertical.JPG" alt="Methanol"></p>

<p><img src="https://i0.wp.com/www.compoundchem.com/wp-content/uploads/2020/02/Organic-Functional-Groups-%E2%80%93-Expanded-v2.png?resize=1536%2C1086&ssl=1" alt="Functional groups"></p>

<p><strong>Tags</strong></p>

<p><a href="/paulsutton/tag:Chemistry" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Chemistry</span></a>,<a href="/paulsutton/tag:Organic" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Organic</span></a>,<a href="/paulsutton/tag:Molecules" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Molecules</span></a>,<a href="/paulsutton/tag:MolyMod" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">MolyMod</span></a>,<a href="/paulsutton/tag:Alkanes" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Alkanes</span></a></p>

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]]></content:encoded>
      <guid>https://personaljournal.ca/paulsutton/organic-chemistry-modelling-2</guid>
      <pubDate>Sat, 22 Jul 2023 06:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Organic Chemistry Modelling</title>
      <link>https://personaljournal.ca/paulsutton/organic-chemistry-modelling</link>
      <description>&lt;![CDATA[Organic Chemistry Modelling&#xA;&#xA;I have been building some organic Chemistry models with Molymods, starting with the first 10 alkanes. &#xA;&#xA;Methane&#xA;Ethane&#xA;Propane&#xA;Butane&#xA;Pentane&#xA;hexane&#xA;heptane&#xA;octane&#xA;nonane&#xA;decane&#xA;&#xA;The order of these are&#xA;&#xA;Methane&#xA;Ethane&#xA;Propane&#xA;Butane&#xA;Pentane&#xA;Hexane&#xA;Heptane&#xA;Octane&#xA;Nonane&#xA;10. Decane&#xA;&#xA;So going from top to bottom, you get an indication of the number of Carbon atoms in the chain.  So 1 for Methane and 10 for Decane.&#xA;&#xA;The general rule is CnH2n+2  BBC Bitesize.  &#xA;&#xA;You can find an infographic on organic compound naming on Compound Chemistry&#xA;&#xA;Tags&#xA;&#xA;#Chemistry,#Organic,#Molecules,#MolyMod,#Alkanes&#xA;&#xA;hr&#xD;&#xA;&#xD;&#xA;table&#xD;&#xA;thead&#xD;&#xA;trtda rel=&#34;me&#34; href=&#34;https://qoto.org/@zleap&#34;Mastodon/a/td&#xD;&#xA;tda href=&#34;https://wiki.ircnow.org/?n=Shelllabs.Intro&#34;ShellLabs/td&#xD;&#xA;tda href=&#34;https://joinmastodon.org/&#34;Join Mastodon/a/td/tr/thead/table&#xD;&#xA;center&#xD;&#xA;AI statement : b Consent is NOT granted to use the content of this blog for the purposes of AI training or similar activity.  Consent CANNOT be assumed, it has to be granted. /b&#xD;&#xA;/center&#xD;&#xA;&#xD;&#xA;a href=&#34;https://liberapay.com/PaulSutton/donate&#34;img alt=&#34;Donate using Liberapay&#34; src=&#34;https://liberapay.com/assets/widgets/donate.svg&#34;/a&#xD;&#xA;]]&gt;</description>
      <content:encoded><![CDATA[<p>Organic Chemistry Modelling</p>

<p>I have been building some organic Chemistry models with <a href="https://www.molymod.com/" rel="nofollow">Molymods</a>, starting with the first 10 alkanes.</p>

<p><img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/methane.JPG" alt="Methane">
<img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/ethane.JPG" alt="Ethane">
<img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/propane.JPG" alt="Propane">
<img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/butane.JPG" alt="Butane">
<img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/pentane.JPG" alt="Pentane">
<img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/hexane.JPG" alt="hexane">
<img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/heptane.JPG" alt="heptane">
<img alt="octane">
<img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/nonane.JPG" alt="nonane">
<img src="https://salsa.debian.org/zleap-guest/blog-media/-/raw/master/decane.JPG" alt="decane"></p>

<p>The order of these are</p>
<ol><li>Methane</li>
<li>Ethane</li>
<li>Propane</li>
<li>Butane</li>
<li>Pentane</li>
<li>Hexane</li>
<li>Heptane</li>
<li>Octane</li>
<li>Nonane</li>
<li>Decane</li></ol>

<p>So going from top to bottom, you get an indication of the number of Carbon atoms in the chain.  So 1 for Methane and 10 for Decane.</p>

<p>The general rule is CnH2n+2  <a href="https://www.bbc.co.uk/bitesize/guides/zy63msg/revision/1" rel="nofollow">BBC Bitesize</a>.</p>

<p>You can find an infographic on organic compound naming on <a href="https://www.compoundchem.com/" rel="nofollow">Compound Chemistry</a></p>

<p><strong>Tags</strong></p>

<p><a href="/paulsutton/tag:Chemistry" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Chemistry</span></a>,<a href="/paulsutton/tag:Organic" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Organic</span></a>,<a href="/paulsutton/tag:Molecules" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Molecules</span></a>,<a href="/paulsutton/tag:MolyMod" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">MolyMod</span></a>,<a href="/paulsutton/tag:Alkanes" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Alkanes</span></a></p>

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      <guid>https://personaljournal.ca/paulsutton/organic-chemistry-modelling</guid>
      <pubDate>Fri, 21 Jul 2023 06:00:00 +0000</pubDate>
    </item>
    <item>
      <title>Left and Right handed molecules</title>
      <link>https://personaljournal.ca/paulsutton/steroisomerism</link>
      <description>&lt;![CDATA[Left and Right handed molecules&#xA;&#xA;Some interesting research has taken place and there is now a better explanation of why we have right and left handed molecules.&#xA;&#xA;The article Breakthrough’ could explain why life molecules are left- or right-handed was published on Science.org and shared on the Fediverse. &#xA;&#xA;I have asked a question about this and also how cis &amp; trans molecules are also created. even though this is referred to as stereoisomerism, so a different topic area. &#xA;&#xA;Papers &amp; articles&#xA;&#xA;I would suggest reading in the context of the above article,  as they are all linked from that.&#xA;&#xA;Origin of biological homo chirality by crystallization of an RNA precursor on a magnetic surface&#xA;Chirality-Induced Magnetization of Magnetite by an RNA Precursor&#xA;The central dogma of biological homo chirality: How does chiral information propagate in a prebiotic network?&#xA;Original mastodon post&#xA;Science Forums &#xA;  You can tag me with @paulsutton&#xA;&#xA;Tags &#xA;&#xA;#Science,#Biochemistry,#Left#Right,#Molecules&#xA;&#xA;hr&#xD;&#xA;&#xD;&#xA;table&#xD;&#xA;thead&#xD;&#xA;trtda rel=&#34;me&#34; href=&#34;https://qoto.org/@zleap&#34;Mastodon/a/td&#xD;&#xA;tda href=&#34;https://wiki.ircnow.org/?n=Shelllabs.Intro&#34;ShellLabs/td&#xD;&#xA;tda href=&#34;https://joinmastodon.org/&#34;Join Mastodon/a/td/tr/thead/table&#xD;&#xA;center&#xD;&#xA;AI statement : b Consent is NOT granted to use the content of this blog for the purposes of AI training or similar activity.  Consent CANNOT be assumed, it has to be granted. /b&#xD;&#xA;/center&#xD;&#xA;&#xD;&#xA;a href=&#34;https://liberapay.com/PaulSutton/donate&#34;img alt=&#34;Donate using Liberapay&#34; src=&#34;https://liberapay.com/assets/widgets/donate.svg&#34;/a&#xD;&#xA;]]&gt;</description>
      <content:encoded><![CDATA[<p>Left and Right handed molecules</p>

<p>Some interesting research has taken place and there is now a better explanation of why we have right and left handed molecules.</p>

<p>The article <a href="https://www.science.org/content/article/breakthrough-could-explain-why-life-molecules-are-left-or-right-handed" rel="nofollow">Breakthrough’ could explain why life molecules are left- or right-handed</a> was published on <a href="https://www.science.org" rel="nofollow">Science.org</a> and shared on the Fediverse.</p>

<p>I have asked a question about this and also <a href="https://en.wikipedia.org/wiki/Cis%E2%80%93trans_isomerism" rel="nofollow">how cis &amp; trans molecules are also created</a>. even though this is referred to as stereoisomerism, so a different topic area.</p>

<p><strong>Papers &amp; articles</strong></p>

<p>I would suggest reading in the context of the above article,  as they are all linked from that.</p>
<ul><li><a href="https://www.science.org/doi/10.1126/sciadv.adg8274" rel="nofollow">Origin of biological homo chirality by crystallization of an RNA precursor on a magnetic surface</a></li>
<li><a href="https://arxiv.org/abs/2304.09095" rel="nofollow">Chirality-Induced Magnetization of Magnetite by an RNA Precursor</a></li>
<li><a href="https://arxiv.org/abs/2306.01803" rel="nofollow">The central dogma of biological homo chirality: How does chiral information propagate in a prebiotic network?</a></li>
<li><a href="https://qoto.org/web/statuses/110547060862794663" rel="nofollow">Original mastodon post</a></li>
<li><a href="https://www.scienceforums.net" rel="nofollow">Science Forums</a>
<ul><li>You can tag me with @paulsutton</li></ul></li></ul>

<p><strong>Tags</strong></p>

<p><a href="/paulsutton/tag:Science" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Science</span></a>,<a href="/paulsutton/tag:Biochemistry" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Biochemistry</span></a>,<a href="/paulsutton/tag:Left" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Left</span></a><a href="/paulsutton/tag:Right" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Right</span></a>,<a href="/paulsutton/tag:Molecules" class="hashtag" rel="nofollow"><span>#</span><span class="p-category">Molecules</span></a></p>

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      <guid>https://personaljournal.ca/paulsutton/steroisomerism</guid>
      <pubDate>Sun, 25 Jun 2023 06:00:00 +0000</pubDate>
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